PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_007074
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family YABBY
Protein Properties Length: 220aa    MW: 24395.7 Da    PI: 7.3106
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_007074genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY204.15.5e-6381704167
        YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 
                  f+  +q+Cyv+C++C+til+vsvP++sl++vvtv+CGhCtsllsvn+  as    +l ++ sh d+      + e+++e+e + + ++ +++++++ s
  DCAR_007074   8 FDLQDQICYVHCGYCTTILLVSVPHSSLSMVVTVKCGHCTSLLSVNMLRASfaplHLSPSLSHSDH------HPEQEMEKEIFPEITKDSQKEMNNSS 99 
                  7889******************************************99888656566666666333......33444444445444444444443333 PP

        YABBY  98 sekl..senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167
                     +  +e+ d   +    ++rPPekr r+Psaynrfik+ei+r+ka+nP+++h++afs+aaknWahfP+  
  DCAR_007074 100 P-VIssDEEGDYVFSSNLVINRPPEKRPRAPSAYNRFIKDEIRRLKAKNPNMAHKQAFSTAAKNWAHFPPSL 170
                  3.231144555666666779*************************************************865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.1E-5911168IPR006780YABBY protein
SuperFamilySSF470954.71E-8119169IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.106.1E-6122202IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MSTVNQGFDL QDQICYVHCG YCTTILLVSV PHSSLSMVVT VKCGHCTSLL SVNMLRASFA  60
PLHLSPSLSH SDHHPEQEME KEIFPEITKD SQKEMNNSSP VISSDEEGDY VFSSNLVINR  120
PPEKRPRAPS AYNRFIKDEI RRLKAKNPNM AHKQAFSTAA KNWAHFPPSL NKLGDEDAAA  180
GNKTHFHARL SAFLFMKPDS NNACCFSTQE LVSTLMLVA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015894702.11e-72PREDICTED: axial regulator YABBY 4
SwissprotQ9LDT33e-63YAB4_ARATH; Axial regulator YABBY 4
TrEMBLD7TDI71e-70D7TDI7_VITVI; Putative uncharacterized protein
STRINGVIT_01s0127g00330.t013e-70(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38124163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.13e-62YABBY family protein